ABOUT THIS RECORDspecies: Helianthus exilis
miRNA family: MIR171
source: microPC, original name: miR171
Taxonomy by NCBI:
Helianthus exilis Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGTTCGGTTCAATAAGA mismatches: 2 bulges: 0 |
pre-miRNA
CGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
)(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
)(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).)))))))))
SIMILARITIES| miRBase rco-MIR171a: 4.0E-9 PMRD vvi-miR171c: 2.0E-7 microPC miR171: 4.0E-40 | UniProt no hits RFAM 1MIR171_1: 7.0E-8 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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