ABOUT THIS RECORDspecies: Cichorium endivia
source: microPC, original name: miR1088
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCACTTGTTCTTCTGT miRNA* CGAGACACATCGTGTACG mismatches: 5 bulges: 1 |
pre-miRNA
GCGTGCACTTGTTCTTCTGTTCAGAACGCTATTAACTTTGGTTAGATGCTATCAACGATGGACTTTTCAGAATCGAGACACATCGTGTACG
dot-bracket secondary structure
.(((((((.(((..(((.((((.(((..(((((.....((((.....)))).....)))))....))).)))).)))..)))..)))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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GCGTGCACTTGTTCTTCTGTTCAGAACGCTATTAACTTTGGTTAGATGCTATCAACGATGGACTTTTCAGAATCGAGACACATCGTGTACG
dot-bracket secondary structure
.(((((((.(((..(((.((((.(((..(((((.....((((.....)))).....)))))....))).)))).)))..)))..)))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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