ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1431
source: microPC, original name: miR1431
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGCGAGTTGGCCCGCTTGC miRNA* AAGCGGGTCAACCCGTGAACC mismatches: 3 bulges: 0 |
pre-miRNA
GCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGATCGACCCACTTGCATCTCTAAGTGCGGCA
AATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCGCTTGC
dot-bracket secondary structure
((((((((((((((.((..((((..((((((.(.(((((.(((.((((((((((.............(((.((((((((((((......)))))).))..
..)))).)))....((....))..))))))))))))).))))).).))))))..))))..)).))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
GCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGATCGACCCACTTGCATCTCTAAGTGCGGCA
AATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCGCTTGC
dot-bracket secondary structure
((((((((((((((.((..((((..((((((.(.(((((.(((.((((((((((.............(((.((((((((((((......)))))).))..
..)))).)))....((....))..))))))))))))).))))).).))))))..))))..)).))))))))))))))
SIMILARITIES| miRBase osa-MIR1431: 1e-97 PMRD osa-miR1431: 1e-97 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
