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ABOUT THIS RECORD
ID:
MNEST045560
species:
Oryza sativa
source:
microPC, original name:
miR171
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGAGCCGTGCCAATATCA
miRNA*
ATATTGGTGCGGTTCAATC
mismatches:
3
bulges:
0
View larger
pre-miRNA
G
ATATTGGTGCGGTTCAATC
AGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGA
TTGAGCCGTGCCAATATCA
dot-bracket secondary structure
(
(((((((..((((((((((
(((.((...(.(((((........))))).)..)).)))))
))))))))..)))))))).
SIMILARITIES
miRBase
osa-MIR171c
:
4e-40
PMRD
osa-miR171c
:
4e-40
microPC
miR171
:
4e-40
UniProt
no hits
RFAM
MIR171_1: 6e-39
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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