ABOUT THIS RECORDspecies: Pinus taeda
source: microPC, original name: miR1314
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGCCTCGAATGTTAGGAGAA miRNA* CTTCAACATTAGAGGCCAATA mismatches: 4 bulges: 1 |
pre-miRNA
TTCTTCAACATTAGAGGCCAATATAGAATCATATTCTTATTCTTAATCGGCCTCGAATGTTAGGAGAA
dot-bracket secondary structure
.(((((((((((.((((((.....(((((.........))))).....)))))).)))))).))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCTTCAACATTAGAGGCCAATATAGAATCATATTCTTATTCTTAATCGGCCTCGAATGTTAGGAGAA
dot-bracket secondary structure
.(((((((((((.((((((.....(((((.........))))).....)))))).)))))).))))).
SIMILARITIES| miRBase pta-MIR1314: 2e-28 PMRD pta-miR1314: 2e-28 microPC miR1314: 1e-30 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
