ABOUT THIS RECORDspecies: Lactuca saligna
source: microPC, original name: miR172
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCTTGATGATGCTGCA miRNA* CGGCATCTTCAAGATTCAC mismatches: 2 bulges: 0 |
pre-miRNA
ATGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTCAATGGGTAATGAGAATCTTGATGATGCTGCA
dot-bracket secondary structure
).((((((((.(((((((((.((((((.....((((..((.....))...))))......))).))).))))))))).)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
ATGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTCAATGGGTAATGAGAATCTTGATGATGCTGCA
dot-bracket secondary structure
).((((((((.(((((((((.((((((.....((((..((.....))...))))......))).))).))))))))).)))))))).
SIMILARITIES| miRBase ath-MIR172a: 1.0E-6 PMRD ath-miRf11033-akr: 1.0E-6 microPC miR172: 1.0E-43 | UniProt no hits RFAM 2mir-172: 2.0E-5 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
