ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR160
source: microPC, original name: miR160
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCA mismatches: 3 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAGCCAGCCCAGTCGAGCTCCCCCAGGATTAGCTGTGGGCGTGTACTACGTTGCTGGCTCTACTGC
GGATGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((((((..(((((((..((((((.(((..(((...((.(((.(((......))).))).))..)))..))))))))).)))).))
)..))))))))).))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAGCCAGCCCAGTCGAGCTCCCCCAGGATTAGCTGTGGGCGTGTACTACGTTGCTGGCTCTACTGC
GGATGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((((((..(((((((..((((((.(((..(((...((.(((.(((......))).))).))..)))..))))))))).)))).))
)..))))))))).))))))).)).
SIMILARITIES| miRBase tae-MIR160: 0.0000000000001 PMRD tae-miR160: 0.0000000000001 microPC miR160: 3e-66 | UniProt no hits RFAM mir-160: 0.000000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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