miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

ABOUT THIS RECORD

ID: MNEST045580
species: Lactuca sativa
source: microPC, original name: miR399

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGCCAAGGGAGATTTGCCC

miRNA*
GTAATTACTCCTTGGGCAGT

mismatches: 3
bulges: 1

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pre-miRNA
GGGTAATTACTCCTTGGGCAGTGGATCGGTCATCGTTTCTACTGCCAAGGGAGATTTGCCC

dot-bracket secondary structure
((((((...((((((.(((((((((.((.....))..))))))))).))))))..))))))

SIMILARITIES

miRBase no hits

PMRD no hits

microPC miR399: 5e-29

UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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