ABOUT THIS RECORDspecies: Lactuca sativa
source: microPC, original name: miR399
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAGGGAGATTTGCCC miRNA* GTAATTACTCCTTGGGCAGT mismatches: 3 bulges: 1 |
pre-miRNA
GGGTAATTACTCCTTGGGCAGTGGATCGGTCATCGTTTCTACTGCCAAGGGAGATTTGCCC
dot-bracket secondary structure
((((((...((((((.(((((((((.((.....))..))))))))).))))))..))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGTAATTACTCCTTGGGCAGTGGATCGGTCATCGTTTCTACTGCCAAGGGAGATTTGCCC
dot-bracket secondary structure
((((((...((((((.(((((((((.((.....))..))))))))).))))))..))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC miR399: 5e-29 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
