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ABOUT THIS RECORD
ID:
MNEST045590
species:
Saccharum officinarum
source:
microPC, original name:
miR319
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCC
miRNA*
AGCTCCCTTCGATCCAATC
mismatches:
1
bulges:
0
View larger
pre-miRNA
G
AGCTCCCTTCGATCCAATC
CAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTCATGGATGCCTCTCTGGTGCAGCAATGACTAATGCTCACCTGCACT
TGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTGC
TTGGATTGAAGGGAGCTCC
dot-bracket secondary structure
(
(((((((((((((((((..
((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((...((((....).))).)))))))
.....)))))).))))).)))).)).)))))).))))....))))))))).)).
)))))))))))))))))).
SIMILARITIES
miRBase
sof-MIR159c
:
3e-95
PMRD
sof-miR319b
:
3e-95
microPC
miR319
:
3e-95
UniProt
no hits
RFAM
MIR159: 1e-91
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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