ABOUT THIS RECORDspecies: Catharanthus roseus
miRNA family: MIR169
source: microPC, original name: miR169
Taxonomy by NCBI:
Catharanthus roseus Catharanthus Vinceae Rauvolfioideae Apocynaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAAGTTGTCTTTGGCT mismatches: 3 bulges: 0 |
pre-miRNA
TCAGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATATTTGCCGCCGTACGTATTTATAC
GAACTCCTCGGCAAGTTGTCTTTGGCT
dot-bracket secondary structure
).(((((((((..(((((((((..............(((((((((...(((((..................)))))))))).)))).((.((((....)))
).))...)))))))))..)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCAGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATATTTGCCGCCGTACGTATTTATAC
GAACTCCTCGGCAAGTTGTCTTTGGCT
dot-bracket secondary structure
).(((((((((..(((((((((..............(((((((((...(((((..................)))))))))).)))).((.((((....)))
).))...)))))))))..)))))))))
SIMILARITIES| miRBase vvi-MIR169g: 6.0E-6 PMRD vvi-miR169g: 6.0E-6 microPC miR169: 1.0E-37 | UniProt no hits RFAM 2MIR169_2: 3.0E-5 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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