ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR171
source: microPC, original name: miR171
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACA miRNA* mismatches: 3 bulges: 0 |
pre-miRNA
GATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATACGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGC
CAATATCACA
dot-bracket secondary structure
(((((((((((((((((((((.((((((((((.((((((.....((..((.....))..)).......)))))).)))))))))).))))))))))))))
)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATACGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGC
CAATATCACA
dot-bracket secondary structure
(((((((((((((((((((((.((((((((((.((((((.....((..((.....))..)).......)))))).)))))))))).))))))))))))))
)))))))...
SIMILARITIES| miRBase osa-MIR171f: 2e-55 PMRD osa-miRf10461-akr: 2e-55 microPC miR171: 6e-58 | UniProt no hits RFAM MIR171_1: 3e-54 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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