ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR169
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCCT miRNA* GCAGTCTCCTTGGCT mismatches: 0 bulges: 2 |
pre-miRNA
AGCCAAGGATGACTTGCCTATTGTGCTCTTCTGAATGATGCAGTGCCATGATCAGTGTGGCCTGGCTGGTTCAGATGAGCCGAGATAGGCAGTCTCCTTG
GCT
dot-bracket secondary structure
(((((((((.((((.(((((((..((((.(((((((.(.((((.(((((.......))))))).))).))))))).))))...)))))))))))))))))
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCCAAGGATGACTTGCCTATTGTGCTCTTCTGAATGATGCAGTGCCATGATCAGTGTGGCCTGGCTGGTTCAGATGAGCCGAGATAGGCAGTCTCCTTG
GCT
dot-bracket secondary structure
(((((((((.((((.(((((((..((((.(((((((.(.((((.(((((.......))))))).))).))))))).))))...)))))))))))))))))
)))
SIMILARITIES| miRBase osa-MIR169g: 9e-54 PMRD osa-miR169g: 9e-54 microPC miR169: 9e-54 | UniProt no hits RFAM MIR169_5: 2e-52 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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