ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR528
source: microPC, original name: miR528
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGGGGCATGCAGAGGAG miRNA* CTACCCTCGGTTGCTCTCCTGTGCCTGCCTCTTCCA mismatches: 3 bulges: 17 |
pre-miRNA
TGGAAGGGGCATGCAGAGGAGCAGGAGGTTTGGTTGGAAGCCGACCTGCGCTACCCTCGGTTGCTCTCCTGTGCCTGCCTCTTCCA
dot-bracket secondary structure
.((((((((((.(((.(((((((((.(((((......)))))..)))))((.(((...))).))..)))).))).)))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGAAGGGGCATGCAGAGGAGCAGGAGGTTTGGTTGGAAGCCGACCTGCGCTACCCTCGGTTGCTCTCCTGTGCCTGCCTCTTCCA
dot-bracket secondary structure
.((((((((((.(((.(((((((((.(((((......)))))..)))))((.(((...))).))..)))).))).)))))))))).
SIMILARITIES| miRBase sbi-MIR528: 3e-19 PMRD osa-miR528: 0.00000002 microPC miR528: 3e-19 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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