ABOUT THIS RECORDspecies: Brassica napus
source: microPC, original name: miR319
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTCCC miRNA* GAGCTTTCTTCGGTCCACTCA mismatches: 4 bulges: 0 |
pre-miRNA
GGGAGCTTTCTTCGGTCCACTCATAGAATAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATATGTAGACATATGG
TAAATGAATGAATGATGCTAGAGACAAATTGAATCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCC
dot-bracket secondary structure
(((((((..((((((((((..((((((.......(((((((((((((..((((.(..((((((((.((..(((((.(((..............))).)))
))..)).))))))))..).))))...))))))))).))))...))))))..))))))))))..)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGAGCTTTCTTCGGTCCACTCATAGAATAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATATGTAGACATATGG
TAAATGAATGAATGATGCTAGAGACAAATTGAATCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCC
dot-bracket secondary structure
(((((((..((((((((((..((((((.......(((((((((((((..((((.(..((((((((.((..(((((.(((..............))).)))
))..)).))))))))..).))))...))))))))).))))...))))))..))))))))))..)))))))
SIMILARITIES| miRBase ath-MIR319b: 3e-73 PMRD ath-miR319b: 3e-73 microPC miR319: 2e-93 | UniProt no hits RFAM MIR159: 6e-72 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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