ABOUT THIS RECORDspecies: Populus tremula
source: microPC, original name: miR169
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCCG miRNA* GCAGGTTGTTCTTGGCT mismatches: 2 bulges: 0 |
pre-miRNA
AGCCAAGGATGACTTGCCGACGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAGAGATGAATCCGTTGGCAGGTTGTTCTTGGCT
dot-bracket secondary structure
(((((((((..(((((((((((..((((((((.(((.(((((..........))))).....)))))))).)))...)))))))))))..)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCCAAGGATGACTTGCCGACGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAGAGATGAATCCGTTGGCAGGTTGTTCTTGGCT
dot-bracket secondary structure
(((((((((..(((((((((((..((((((((.(((.(((((..........))))).....)))))))).)))...)))))))))))..)))))))))
SIMILARITIES| miRBase ptc-MIR169b: 2e-30 PMRD ptr-miR169a: 2e-51 microPC miR169: 2e-51 | UniProt no hits RFAM MIR169_2: 3e-29 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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