ABOUT THIS RECORDspecies: Panicum virgatum
source: microPC, original name: miR156
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAGAAGAGAGTGAGCAC miRNA* GCTCACTCTCTATCTGTC mismatches: 0 bulges: 1 |
pre-miRNA
GACAGAAGAGAGTGAGCACACATGGTGGTTTCTTAGCATGAGTGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTC
dot-bracket secondary structure
(((((((((((((((((((.((((((....((((((((((.....)))))))))))))))).))))))))))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GACAGAAGAGAGTGAGCACACATGGTGGTTTCTTAGCATGAGTGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTC
dot-bracket secondary structure
(((((((((((((((((((.((((((....((((((((((.....)))))))))))))))).))))))))))))).))))))
SIMILARITIES| miRBase ssp-MIR156: 4e-37 PMRD sbi-miR156b: 1e-36 microPC miR156: 2e-41 | UniProt no hits RFAM mir-156: 2e-35 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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