ABOUT THIS RECORDspecies: Brassica napus
source: microPC, original name: miR399
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCC miRNA* CAAGATCTCTATTGGCAGA mismatches: 1 bulges: 1 |
pre-miRNA
GGCAAGATCTCTATTGGCAGAAAACCATTACTTAGATCTTTGCATCTCTTTCTGCATTGATTTGTAGTGAGTTCTCTGCCAAAGGAGATTTGCC
dot-bracket secondary structure
((((.(((((((.((((((((.(((((((((..(((((..((((........))))..))))))))))).))).)))))))).)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GGCAAGATCTCTATTGGCAGAAAACCATTACTTAGATCTTTGCATCTCTTTCTGCATTGATTTGTAGTGAGTTCTCTGCCAAAGGAGATTTGCC
dot-bracket secondary structure
((((.(((((((.((((((((.(((((((((..(((((..((((........))))..))))))))))).))).)))))))).)))))))))))
SIMILARITIES| miRBase bna-MIR399: 2e-48 PMRD bna-miR399: 2e-48 microPC miR399: 2e-48 | UniProt no hits RFAM mir-399: 7e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
