ABOUT THIS RECORDspecies: Nuphar advena
source: microPC, original name: miR390
Taxonomy by NCBI:
Nuphar advena Nuphar Nymphaeaceae Nymphaeales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCAGGAGGGATAGCGCC miRNA* CGCTGTCTATCCTGAG mismatches: 1 bulges: 0 |
pre-miRNA
CTCAGGAGGGATAGCGCCTAACAGTGATTTGGAAACTGTATATATATGTATATATATGGTGAAGCATGAGCATGGGTGGCGCTGTCTATCCTGAG
dot-bracket secondary structure
(((((((.((((((((((...((((.........(((((((((((....))))))))))).........)).))...)))))))))).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CTCAGGAGGGATAGCGCCTAACAGTGATTTGGAAACTGTATATATATGTATATATATGGTGAAGCATGAGCATGGGTGGCGCTGTCTATCCTGAG
dot-bracket secondary structure
(((((((.((((((((((...((((.........(((((((((((....))))))))))).........)).))...)))))))))).)))))))
SIMILARITIES| miRBase zma-MIR390b: 0.0003 PMRD zma-miR390: 0.0003 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
