ABOUT THIS RECORDspecies: Glycine max
source: microPC, original name: miR160
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCC miRNA* CGTATGAGGAGCCAAGCA mismatches: 4 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCATTTGTAGAGCTCATCGAAGCATCAATGACCTTTGTGGATGGCGTATGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((..((((((((((..(((((.((((.((....)).)))).)))))..))))))))))..))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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TGCCTGGCTCCCTGTATGCCATTTGTAGAGCTCATCGAAGCATCAATGACCTTTGTGGATGGCGTATGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((..((((((((((..(((((.((((.((....)).)))).)))))..))))))))))..))))))).)).
SIMILARITIES| miRBase gma-MIR160: 4e-40 PMRD gma-miR160a: 4e-40 microPC miR160: 4e-40 | UniProt no hits RFAM mir-160: 5e-27 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
