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ABOUT THIS RECORD

ID: MNEST045648
species: Saccharum officinarum
miRNA family: MIR159
source: microPC, original name: miR159

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTGGATTGAAGGGAGCTCCT

miRNA*
GAGCTCCCTTCGATCCAATCC

mismatches: 3
bulges: 0

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pre-miRNA
AAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTCATGGATGCCTCTCTGGTGCAGCAATGACTAATGCTCACCTGCA
CTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTGCTTGGATTGAAGGGAGCTCCT


dot-bracket secondary structure
..((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((...((((....).))).)))))
)).....)))))).))))).)))).)).)))))).))))....))))))))).)).))))))))))))))))))..



SIMILARITIES
miRBase sof-MIR159c: 4e-97

PMRD sof-miR319b: 4e-97

microPC miR319: 4e-97
UniProt no hits

RFAM MIR159: 2e-93

Identical with: miR319 from microPC (MNEST046130)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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