ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR528
source: microPC, original name: miR528
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGGGGCATGCAGAGGAG miRNA* CCTGTGCTTGCCTCTTCCA mismatches: 3 bulges: 0 |
pre-miRNA
TGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCA
dot-bracket secondary structure
.((((((((((.(((.(((((..(((((..(((..(((((.....)))))...)))..)))))))))).))).)))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
TGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCA
dot-bracket secondary structure
.((((((((((.(((.(((((..(((((..(((..(((((.....)))))...)))..)))))))))).))).)))))))))).
SIMILARITIES| miRBase osa-MIR528: 2e-42 PMRD osa-miR528: 2e-42 microPC miR528: 0.00000002 | UniProt no hits RFAM no hits |
Identical with: osa-miR528 from PMRD (MNEST049018) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
