ABOUT THIS RECORDspecies: Lactuca virosa
source: microPC, original name: miR171
Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCATG miRNA* TGATGTTGGAATGGCTCAATC mismatches: 2 bulges: 0 |
pre-miRNA
GATGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAATATCATG
dot-bracket secondary structure
)((((((((((.(((((((((((((((.(((.(.(((.(..........).))).).))).))))))))))))))).)))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAATATCATG
dot-bracket secondary structure
)((((((((((.(((((((((((((((.(((.(.(((.(..........).))).).))).))))))))))))))).)))))))))).
SIMILARITIES| miRBase tcc-MIR171f: 7.0E-11 PMRD vvi-miR171i: 3.0E-10 microPC miR171: 1.0E-43 | UniProt no hits RFAM 1MIR171_1: 5.0E-9 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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