ABOUT THIS RECORDspecies: Prunus persica
source: microPC, original name: miR171
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCA miRNA* ATGTTGGCGTGGCTCAATC mismatches: 1 bulges: 0 |
pre-miRNA
TGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCGTGCCAATATCA
dot-bracket secondary structure
.((((((((((((((((((((((((.(((...(((((.......)))))...))).)))))))))))))))))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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TGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCGTGCCAATATCA
dot-bracket secondary structure
.((((((((((((((((((((((((.(((...(((((.......)))))...))).)))))))))))))))))))))))).
SIMILARITIES| miRBase vvi-MIR171i: 0.00000000000002 PMRD ppe-miR171: 9e-41 microPC miR171: 9e-41 | UniProt no hits RFAM MIR171_1: 0.0000000000003 |
Identical with: ppe-miR170 from PMRD (MNEST051345) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
