ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR160
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGCATGCCA miRNA* GCGTGCAAGGAGCCAAGC mismatches: 2 bulges: 0 |
pre-miRNA
GCCTGGCTCCCTGCATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((.((((((((((((((..(((...(((((.........)))))))))))))))))))))).))))))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCTGGCTCCCTGCATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((.((((((((((((((..(((...(((((.........)))))))))))))))))))))).))))))).))
SIMILARITIES| miRBase osa-MIR160b: 9e-38 PMRD osa-miR160m: 9e-38 microPC miR160: 4e-40 | UniProt no hits RFAM mir-160: 2e-36 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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