ABOUT THIS RECORDspecies: Glycine max
source: microPC, original name: miR171
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATC miRNA* TATTGGCCTGGTTCACTC mismatches: 2 bulges: 0 |
pre-miRNA
GATATTGGCCTGGTTCACTCAGACATGTATACCACGGCACGGTTGTGTCCTTGCTAGAAAGATTTAAAACAAAATACATGTTGTGATTGTGGTTTTGGGT
TTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
(((((((((.(((((((.((((((......(((((((((((..(((((..(((.((((....))))...))).)))))...)))).))))))).....))
)))).))))))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATATTGGCCTGGTTCACTCAGACATGTATACCACGGCACGGTTGTGTCCTTGCTAGAAAGATTTAAAACAAAATACATGTTGTGATTGTGGTTTTGGGT
TTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
(((((((((.(((((((.((((((......(((((((((((..(((((..(((.((((....))))...))).)))))...)))).))))))).....))
)))).))))))).)))))))))
SIMILARITIES| miRBase mtr-MIR171g: 0.0000000000004 PMRD mtr-miR171g: 0.0000000000004 microPC miR171: 5e-65 | UniProt no hits RFAM MIR171_1: 0.000000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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