ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR819
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTTATAAGACTTTCT miRNA* AAAGTCTTATAATATGA mismatches: 1 bulges: 0 |
pre-miRNA
TCAGGTTATAAGACTTTCTGGCATTACTCACATTCATTAACATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAATATGA
dot-bracket secondary structure
(((.(((((((((((((((((((((.(((((((((((..........))))))))))).))))))))))))))))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCAGGTTATAAGACTTTCTGGCATTACTCACATTCATTAACATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAATATGA
dot-bracket secondary structure
(((.(((((((((((((((((((((.(((((((((((..........))))))))))).))))))))))))))))))))).)))
SIMILARITIES| miRBase osa-MIR819j: 1e-21 PMRD osa-miR819j: 1e-21 microPC miR1436: 3e-16 | UniProt no hits RFAM MIR1122: 2e-20 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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