ABOUT THIS RECORDspecies: Vigna unguiculata
source: microPC, original name: miR399
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCT miRNA* GGCTTCTCTTTGTTGGCAGG mismatches: 4 bulges: 0 |
pre-miRNA
AGGGCTTCTCTTTGTTGGCAGGAAATGACATGATCATCTCATGAAATATCTTGCCAAAGGAGAGTTGCCCT
dot-bracket secondary structure
(((((..(((((..(((((((((.((..(((((.....)))))..)).)))))))))..)))))..)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGGCTTCTCTTTGTTGGCAGGAAATGACATGATCATCTCATGAAATATCTTGCCAAAGGAGAGTTGCCCT
dot-bracket secondary structure
(((((..(((((..(((((((((.((..(((((.....)))))..)).)))))))))..)))))..)))))
SIMILARITIES| miRBase pvu-MIR399a: 1e-27 PMRD pvu-miR399a: 1e-27 microPC miR399: 7e-35 | UniProt no hits RFAM mir-399: 0.00000006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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