ABOUT THIS RECORDspecies: Elaeis guineensis
source: microPC, original name: miR398
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCT miRNA* GGGCGACCTGCGACCACACG mismatches: 2 bulges: 0 |
pre-miRNA
AGGGGCGACCTGCGACCACACGAGCTGAAGTCCTTCATCGAAATCTCGTCCCTCGATTGCTGCAATCGGACGGTGCCCGTGTGTTCTCAGGTCGCCCCT
dot-bracket secondary structure
((((((((((((.((.((((((.((.(((....))).........((((((...(((((...))))))))))).)).)))))).)).))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGGGCGACCTGCGACCACACGAGCTGAAGTCCTTCATCGAAATCTCGTCCCTCGATTGCTGCAATCGGACGGTGCCCGTGTGTTCTCAGGTCGCCCCT
dot-bracket secondary structure
((((((((((((.((.((((((.((.(((....))).........((((((...(((((...))))))))))).)).)))))).)).))))))))))))
SIMILARITIES| miRBase osa-MIR398b: 0.00002 PMRD osa-miR398b: 0.00002 microPC miR398: 2e-51 | UniProt no hits RFAM MIR398: 0.0003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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