ABOUT THIS RECORDspecies: Carthamus tinctorius
source: microPC, original name: miR156
Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGAGAGTGAGCAC miRNA* GCTCACTGCTCTATCTG mismatches: 0 bulges: 2 |
pre-miRNA
CAGAAGAGAGTGAGCACACAAAGGCAAATTATACCCAAGAGTCTTGTATGATTGTTTTGGGTGCTCACTGCTCTATCTG
dot-bracket secondary structure
(((((((((((((((((...(((((((.((((((...........)))))))))))))..))))))))).)))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAAGAGAGTGAGCACACAAAGGCAAATTATACCCAAGAGTCTTGTATGATTGTTTTGGGTGCTCACTGCTCTATCTG
dot-bracket secondary structure
(((((((((((((((((...(((((((.((((((...........)))))))))))))..))))))))).)))).))))
SIMILARITIES| miRBase ath-MIR156a: 0.00000001 PMRD ath-miR156a: 0.00000001 microPC miR156: 1e-39 | UniProt no hits RFAM mir-156: 0.0000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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