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ABOUT THIS RECORD
ID:
MNEST045718
species:
Populus tremula
miRNA family:
MIR169
source:
microPC, original name:
miR169
Taxonomy by NCBI:
Populus tremula
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGACTTGCCTG
miRNA*
GCAAGTGTCCTTGGCTAA
mismatches:
0
bulges:
2
View larger
pre-miRNA
TAGCCAAGGATGACTTGCCTG
TAGCCTCCCTCGGATTCAAGAACACGAGCATTTATGCAGTGCTCAAAAGAAAAGGAGAGAATGATCCCAGCTTGCTGCG
CGCTACAAGGTCAATCCATGGAAGCAGCGAGAAGAAGGTGGTTTATAGCTAGAATCCTCATGAGGTTCACA
GCAAGTGTCCTTGGCTAA
dot-bracket secondary structure
(((((((((((.((((((.((
(((((((....((((((.((.....(((((((.....)))))))..............((((.(((....((((((((.
..(((...((.....)).)))..)))))))).....))).))))....)).))))))....)))))).)))
))))))))))))))))).
SIMILARITIES
miRBase
ptc-MIR169k
:
5e-66
PMRD
ptc-miR169k
:
5e-66
microPC
miR169
:
8e-105
UniProt
no hits
RFAM
MIR169_2: 9e-65
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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