ABOUT THIS RECORDspecies: Brassica napus
source: microPC, original name: miR156
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGAAAGAGAGCACAA miRNA* GTGCTCTCTTTACTTCTG mismatches: 1 bulges: 1 |
pre-miRNA
CAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAATATAAAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTG
dot-bracket secondary structure
((((((((((((((((((..((.((....(((((........))))).....)).))..)))))))))))).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAATATAAAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTG
dot-bracket secondary structure
((((((((((((((((((..((.((....(((((........))))).....)).))..)))))))))))).))))))
SIMILARITIES| miRBase ath-MIR156h: 1e-24 PMRD ath-miR156h: 1e-24 microPC miR156: 5e-39 | UniProt no hits RFAM no hits |
Identical with: miR157 from microPC (MNEST045310) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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