ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR446
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCAATATGAATGTGGGCAATG miRNA* TTGTCCACATTCATATAGATTTT mismatches: 2 bulges: 0 |
pre-miRNA
CATTGTCCACATTCATATAGATTTTAATGAATCTAAACATATATGTGTGTCTAGATTCATTAACATCAATATGAATGTGGGCAATG
dot-bracket secondary structure
((((((((((((((((((.(((.((((((((((((.(((((....))))).)))))))))))).))).))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CATTGTCCACATTCATATAGATTTTAATGAATCTAAACATATATGTGTGTCTAGATTCATTAACATCAATATGAATGTGGGCAATG
dot-bracket secondary structure
((((((((((((((((((.(((.((((((((((((.(((((....))))).)))))))))))).))).))))))))))))))))))
SIMILARITIES| miRBase osa-MIR819c: 2e-29 PMRD osa-miR819c: 2e-29 microPC miR809: 1e-18 | UniProt no hits RFAM MIR1122: 2e-29 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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