ABOUT THIS RECORDspecies: Manihot esculenta
source: microPC, original name: miR169
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGC mismatches: 0 bulges: 2 |
pre-miRNA
GCCAAGGATGACTTGCCTGCAGCTTCACGCAGATTTTTCATCAATTTGCATGAAATAACGCGGCTAACTAAGGTTTTGAATATGTATGTGGTTTACAGGC
AGTCTCCTTGGC
dot-bracket secondary structure
((((((((.((((.(((((.((((.((..((....(((((((.....).))))))...((..(((......)))..))....))..)).))))..)))))
))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCAAGGATGACTTGCCTGCAGCTTCACGCAGATTTTTCATCAATTTGCATGAAATAACGCGGCTAACTAAGGTTTTGAATATGTATGTGGTTTACAGGC
AGTCTCCTTGGC
dot-bracket secondary structure
((((((((.((((.(((((.((((.((..((....(((((((.....).))))))...((..(((......)))..))....))..)).))))..)))))
))))))))))))
SIMILARITIES| miRBase sly-MIR169b: 0.00008 PMRD sly-miR169b: 0.00008 microPC miR169: 4e-59 | UniProt no hits RFAM MIR169_5: 0.0001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
