ABOUT THIS RECORDspecies: Cichorium intybus
source: microPC, original name: miR166
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCT miRNA* GGATGTTGGCTGGCTCGGTG mismatches: 5 bulges: 0 |
pre-miRNA
AGGGATGTTGGCTGGCTCGGTGCAATCACCTTTTCTTACCATTTCGTATAAAAGGGTGATGGCATCGGACCAGGCTTCATTCCT
dot-bracket secondary structure
(((((((..(.((((..((((((.((((((((((..(((......)))..)))))))))).))))))..)))).)..)))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGGATGTTGGCTGGCTCGGTGCAATCACCTTTTCTTACCATTTCGTATAAAAGGGTGATGGCATCGGACCAGGCTTCATTCCT
dot-bracket secondary structure
(((((((..(.((((..((((((.((((((((((..(((......)))..)))))))))).))))))..)))).)..)))))))
SIMILARITIES| miRBase aqc-MIR166d: 0.00006 PMRD ini-miR166: 0.000000001 microPC miR166: 2e-41 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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