ABOUT THIS RECORDspecies: Glycine max
source: microPC, original name: miR156
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGAGAGAGAGCACAAC miRNA* GTGTGCCCTCTCTTCCTCTG mismatches: 3 bulges: 1 |
pre-miRNA
CAGAAGAGAGAGAGCACAACCCGGGAATGGCTAAAGGAGTCTTTGCCTTTGTTGGGAGTGTGCCCTCTCTTCCTCTG
dot-bracket secondary structure
((((.(((((((.(((((.(((((.((.(((.((((....))))))).)).)))))..))))).)))))))..))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAAGAGAGAGAGCACAACCCGGGAATGGCTAAAGGAGTCTTTGCCTTTGTTGGGAGTGTGCCCTCTCTTCCTCTG
dot-bracket secondary structure
((((.(((((((.(((((.(((((.((.(((.((((....))))))).)).)))))..))))).)))))))..))))
SIMILARITIES| miRBase gma-MIR156b: 2e-38 PMRD gma-miR156b: 2e-38 microPC miR156: 2e-38 | UniProt no hits RFAM mir-156: 3e-16 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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