ABOUT THIS RECORDspecies: Aquilegia formosa x Aquilegia pubescens
source: microPC, original name: miR160
Taxonomy by NCBI:
Aquilegia formosa x Aquilegia pubescens Aquilegia Ranunculaceae Ranunculales stem eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCC miRNA* CGTGCGAGGAGCCATGCA mismatches: 3 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCATTTGCTTAGTCCATTTAGTATTAGATGGCCTTTGTGGATGGCGTGCGAGGAGCCATGCA
dot-bracket secondary structure
.((.(((((((.(((((((((((..(..((.(((((((....))))))).))..)..))))))))))).))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCATTTGCTTAGTCCATTTAGTATTAGATGGCCTTTGTGGATGGCGTGCGAGGAGCCATGCA
dot-bracket secondary structure
.((.(((((((.(((((((((((..(..((.(((((((....))))))).))..)..))))))))))).))))))).)).
SIMILARITIES| miRBase aqc-MIR160b: 4e-40 PMRD aqc-miR160b: 4e-40 microPC miR160: 4e-40 | UniProt no hits RFAM mir-160: 0.000000004 |
Identical with: aqc-miR160b from PMRD (MNEST046865) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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