ABOUT THIS RECORDspecies: Glycine max
source: microPC, original name: miR159
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGGAGTGAAGGGAGCTC miRNA* GTTCCCTGCACTCCAAGTC mismatches: 2 bulges: 0 |
pre-miRNA
GAGTTCCCTGCACTCCAAGTCTGAAAGGATATGATGGTAAACCTCTACTGCTAGTTCATGGATACCTCTGACTTCTTAACAACATGCGTTCGAAGTCAAG
GGTTTGCATGCCCTGGGAGATGAGTTTACCTTGATCTTTTGGTATTGGAGTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((.((((((((..(..(((((.((....(((((((.((..((.((((..((((.(.(((..(((((((..(((.......))).)))))))..
))).).))))..)))).))..))))))))).)).)))))..)..)))))))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGTTCCCTGCACTCCAAGTCTGAAAGGATATGATGGTAAACCTCTACTGCTAGTTCATGGATACCTCTGACTTCTTAACAACATGCGTTCGAAGTCAAG
GGTTTGCATGCCCTGGGAGATGAGTTTACCTTGATCTTTTGGTATTGGAGTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((.((((((((..(..(((((.((....(((((((.((..((.((((..((((.(.(((..(((((((..(((.......))).)))))))..
))).).))))..)))).))..))))))))).)).)))))..)..)))))))).)))))))))
SIMILARITIES| miRBase gma-MIR159b: 9e-89 PMRD gma-miR159b: 9e-89 microPC miR159: 9e-89 | UniProt no hits RFAM MIR159: 0.00000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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