ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR157
source: microPC, original name: miR157
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATTCTTCTGTCA mismatches: 1 bulges: 1 |
pre-miRNA
TGACAGAAGATAGAGAGCACAGATGATGAAATGCATGAAAGGAAATTGCATCTCGCTCCTTTGTGCTCTCTATTCTTCTGTCA
dot-bracket secondary structure
.((((((((((((((((((((((.(((((.(((((...........))))).))).)).))))))))))))).))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACAGAAGATAGAGAGCACAGATGATGAAATGCATGAAAGGAAATTGCATCTCGCTCCTTTGTGCTCTCTATTCTTCTGTCA
dot-bracket secondary structure
.((((((((((((((((((((((.(((((.(((((...........))))).))).)).))))))))))))).))))))))).
SIMILARITIES| miRBase gma-MIR156e: 5e-30 PMRD gma-miR157c: 5e-30 microPC miR156: 2e-38 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
