ABOUT THIS RECORDspecies: Glycine max
source: microPC, original name: miR398
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGAGTGAATCTGAGAACACAAG mismatches: 2 bulges: 1 |
pre-miRNA
AGGAGTGAATCTGAGAACACAAGGCTGGTTTGCACTGCTATATCATCTATTGGTATAAGGTGAATTTACTTTGTGTTCTCAGGTCACCCCTT
dot-bracket secondary structure
(((.((((.(((((((((((((((..((((..(.((..(((((((.....))))))))))..))))..))))))))))))))))))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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AGGAGTGAATCTGAGAACACAAGGCTGGTTTGCACTGCTATATCATCTATTGGTATAAGGTGAATTTACTTTGTGTTCTCAGGTCACCCCTT
dot-bracket secondary structure
(((.((((.(((((((((((((((..((((..(.((..(((((((.....))))))))))..))))..))))))))))))))))))).))).
SIMILARITIES| miRBase gma-MIR398a: 3e-47 PMRD gma-miR398a: 3e-47 microPC miR398: 3e-47 | UniProt no hits RFAM MIR398: 0.000005 |
Identical with: gma-MIR398a from miRBase (MNEST040478) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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