ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACT miRNA* TTCAATAAAGCTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTGCATCCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTACTCCCAAATCTTGTTTTGCGGTTCAATAAAGCTGTGGG
A
dot-bracket secondary structure
((((((((((((.((((((((((....((((((.((...(((....)))...)).)))))).....((.....))...)))))))))).)))))))))))
)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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TTCCACAGCTTTCTTGAACTGCATCCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTACTCCCAAATCTTGTTTTGCGGTTCAATAAAGCTGTGGG
A
dot-bracket secondary structure
((((((((((((.((((((((((....((((((.((...(((....)))...)).)))))).....((.....))...)))))))))).)))))))))))
)
SIMILARITIES| miRBase gma-MIR396a: 1e-52 PMRD gma-miR396a: 1e-52 microPC miR396: 1e-52 | UniProt no hits RFAM MIR396: 0.00000000002 |
Identical with: gma-miR396a from PMRD (MNEST048578) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
