ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR390
source: microPC, original name: miR390
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATCCTGAGTTT mismatches: 2 bulges: 0 |
pre-miRNA
TAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTATCCATCCTGAGTTT
dot-bracket secondary structure
)((((((((((.(((((((((.(((((.((((...(...((.((......)).))...)......)))).)).))).))))))))).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTATCCATCCTGAGTTT
dot-bracket secondary structure
)((((((((((.(((((((((.(((((.((((...(...((.((......)).))...)......)))).)).))).))))))))).))))))))))
SIMILARITIES| miRBase ghr-MIR390c: 1.0E-49 PMRD ghr-miR390c: 1.0E-49 microPC miR390: 1.0E-49 | UniProt no hits RFAM 0MIR390: 1.0E-9 |
Identical with: ghr-miR390c from PMRD (MNEST048500), ghr-MIR390a from miRBase , ghr-MIR390c from miRBase , ghr-MIR390b from miRBase , ghr-miR390a from PMRD , ghr-miR390b from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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