ABOUT THIS RECORDspecies: Lactuca saligna
source: microPC, original name: miR319
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGGGAGCTC miRNA* GCTCCTTGAAGTCCAATA mismatches: 2 bulges: 0 |
pre-miRNA
GAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGATCCCTCAAGTCCTATCTTTGTTGTTGTATAGGCTTTGTGGC
TTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((..(((((((.((((((((.(((.((((.((..(((((.(((((.((((.(..((.((((.((((((.........).))))).)))).)).
.).)))).))))).)).)))..))))))..))).)))))))).)))))))..)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGATCCCTCAAGTCCTATCTTTGTTGTTGTATAGGCTTTGTGGC
TTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((..(((((((.((((((((.(((.((((.((..(((((.(((((.((((.(..((.((((.((((((.........).))))).)))).)).
.).)))).))))).)).)))..))))))..))).)))))))).)))))))..)))))))))
SIMILARITIES| miRBase rco-MIR159: 0.0000000001 PMRD vvi-miR159c: 0.00000003 microPC miR159: 4e-88 | UniProt no hits RFAM MIR159: 0.000000002 |
Identical with: miR159 from microPC (MNEST045187) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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