miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST045789
species:
Citrus sinensis
source:
microPC, original name:
miR390
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGCTCAGGAGGGATAGC
miRNA*
TATCCATCCTGAGTTT
mismatches:
1
bulges:
0
View larger
pre-miRNA
AAGCTCAGGAGGGATAGC
GCCATGGGTGCCATGAATATGGGAATGATCTAGGGTTTCATGATAAATAATGGGCACTGGCGC
TATCCATCCTGAGTTT
dot-bracket secondary structure
((((((((((.(((((((
((((...(((((............((((.........))))...........)))))))))))
))))).))))))))))
SIMILARITIES
miRBase
csi-MIR390
:
3e-50
PMRD
ghr-miR390c
:
0.0000003
microPC
miR390
:
3e-50
UniProt
no hits
RFAM
MIR390: 0.000005
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record