ABOUT THIS RECORDspecies: Lactuca sativa
source: microPC, original name: miR169
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCC miRNA* CAGTCTTCTTGGCT mismatches: 0 bulges: 2 |
pre-miRNA
AGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGACCTTTGTTAGACCGGTTATCAGGCAGTCTTCTTGGCT
dot-bracket secondary structure
(((((((((.((((.(((((..(((.(((..((((((.(((..........)))))))))..)))..)))...))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGACCTTTGTTAGACCGGTTATCAGGCAGTCTTCTTGGCT
dot-bracket secondary structure
(((((((((.((((.(((((..(((.(((..((((((.(((..........)))))))))..)))..)))...))))))))))))))))))
SIMILARITIES| miRBase ath-MIR169m: 0.000004 PMRD ath-miR169m: 0.000004 microPC miR169: 1e-46 | UniProt no hits RFAM MIR169_5: 0.00008 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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