ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIR408
source: microPC, original name: miR408
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACGGGGAACAGGCAGAGCATG mismatches: 5 bulges: 0 |
pre-miRNA
AGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACATGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCT
dot-bracket secondary structure
...(((((((.((((((.((((((.((((((((..((((........)))).)))))))).)))))).)))))).)))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACATGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCT
dot-bracket secondary structure
...(((((((.((((((.((((((.((((((((..((((........)))).)))))))).)))))).)))))).)))))))...
SIMILARITIES| miRBase ptc-MIR408: 1e-40 PMRD ptc-miR408: 1e-40 microPC miR408: 6e-42 | UniProt no hits RFAM MIR408: 2e-39 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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