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ABOUT THIS RECORD
ID:
MNEST045822
species:
Brassica napus
source:
microPC, original name:
miR319
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTC
miRNA*
GCTCCTTAAAGTTCAAACG
mismatches:
2
bulges:
0
View larger
pre-miRNA
GA
GCTCCTTAAAGTTCAAACG
AGAGTTTAGCAGGGTAAAGAAAAGCTGCTAAGCTATGGATCCCATAAGCCCTAACCTTAAACATAGAAAAAGGATTTTG
GTTATATGGCTTGCATATCTCAGGAGCTTTAACTTGCCCTTTAATGGCTTTTACTCTTC
TTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
((
(((((((..((((((((.(
(((((..((((((((((...((((((.((.((.((((.(..(((((((((..((((((...........)))).))..)
))).)))))..).)))).)).)).))))))...)))))))......)))...)))))).
))))))))..)))))))))
SIMILARITIES
miRBase
aly-MIR159a
:
1e-72
PMRD
bra-miR159a
:
3e-67
microPC
miR159
:
3e-98
UniProt
no hits
RFAM
MIR159: 3e-64
Identical with:
miR159
from microPC (
MNEST045981
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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