ABOUT THIS RECORDspecies: Populus nigra
source: microPC, original name: miR1030
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCACCTGCACCTGCACC miRNA* TGCAGGTGCAAATGCAG mismatches: 3 bulges: 0 |
pre-miRNA
CTGCACCTGCACCTGCACCTCAACTAAGCTTATTAGTTTCCATATCTAACACTCTATATCTAATTGTCCCACATACTGTATCGACAGAACTTGATTTTGT
TTGTGGAGTCAAAAACAAAACAAACGCAAAAGATGCAGGTGCAAATGCAG
dot-bracket secondary structure
(((((..((((((((((.((.((((((.....)))))).........................(((.((((((.((...(((((......)))))...))
.))))).).)))..................)).))))))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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CTGCACCTGCACCTGCACCTCAACTAAGCTTATTAGTTTCCATATCTAACACTCTATATCTAATTGTCCCACATACTGTATCGACAGAACTTGATTTTGT
TTGTGGAGTCAAAAACAAAACAAACGCAAAAGATGCAGGTGCAAATGCAG
dot-bracket secondary structure
(((((..((((((((((.((.((((((.....)))))).........................(((.((((((.((...(((((......)))))...))
.))))).).)))..................)).))))))))))..)))))
SIMILARITIES| miRBase ptc-MIR530b: 3e-51 PMRD ptc-miRf11519-akr: 3e-51 microPC miR1030: 1e-81 | UniProt no hits RFAM MIR530: 6e-50 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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