ABOUT THIS RECORDspecies: Gossypium raimondii
source: microPC, original name: miR156
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGATAGAGAGCACA miRNA* TGCTCTTTATGCTTCTG mismatches: 0 bulges: 1 |
pre-miRNA
GCAGAAGATAGAGAGCACAGATGATGGTGTGCAATTAGGAGTCTTGAAGCAATGCATCCCACTCCTTTGTGCTCTTTATGCTTCTG
dot-bracket secondary structure
)((((((((((((((((((((.(((((..((((.(((((...))))).....))))..))).)).)))))))))))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCAGAAGATAGAGAGCACAGATGATGGTGTGCAATTAGGAGTCTTGAAGCAATGCATCCCACTCCTTTGTGCTCTTTATGCTTCTG
dot-bracket secondary structure
)((((((((((((((((((((.(((((..((((.(((((...))))).....))))..))).)).)))))))))))))).))))))
SIMILARITIES| miRBase gra-MIR157a: 4.0E-43 PMRD gra-miR157a: 4.0E-43 microPC miR157: 4.0E-43 | UniProt no hits RFAM no hits |
Identical with: miR157 from microPC (MNEST044919), gra-MIR157a from miRBase , miR157 from microPC , gra-miR157a from PMRD , miR157 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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