ABOUT THIS RECORDspecies: Coffea canephora
source: microPC, original name: miR396
Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACATCTTTCTTGAACT miRNA* TTCAATAAAGCTGTGGGA mismatches: 2 bulges: 0 |
pre-miRNA
TTCCACATCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCGAGACTTCGGAGGAGGTGACGCGATGATGGCGGTTCAATAAAG
CTGTGGGA
dot-bracket secondary structure
(((((((.((((.(((((((((((((.((.(((((.(((((.((((...)))).)).))).(....)....))))).)).).))).))))))))).))))
.)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCACATCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCGAGACTTCGGAGGAGGTGACGCGATGATGGCGGTTCAATAAAG
CTGTGGGA
dot-bracket secondary structure
(((((((.((((.(((((((((((((.((.(((((.(((((.((((...)))).)).))).(....)....))))).)).).))).))))))))).))))
.)))))))
SIMILARITIES| miRBase bdi-MIR396d: 0.000005 PMRD zma-miR396l: 0.00002 microPC miR396: 1e-56 | UniProt no hits RFAM MIR396: 0.0004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
